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Type: course video exo open book book article git repo website
level: begin intermediate advanced
Overview
| Analysis of community ecology data in R D Zelený – A wiki giving an introductory overview of relevant theory, real community datasets and example R scripts |
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| Numerical Ecology P Legendre, L Legendre – Reference textbook |
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| Numerical Ecology with R D Borcard, F Gillet, P Legendre – Exploration of the methods by means of applied and extensively commented examples |
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Hierarchical Models
Vegan
A R package for community analysis
| Introduction to multivariate data analysis using vegan G Simpson – a practical introduction to some of the most useful functions in vegan |
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| Multivariate Analysis of Ecological Communities in R: vegan tutorial J. Oksanen – demostrates the use of ordination methods in Rpackage vegan, assumes familiarity both with R and with community ordination |
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| A Vegan Tutorial P Clark – Quick introduction to useful functions |
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| Advanced community data analysis using the vegan package in R G Simpson N Zimmerman – a follow-up to the “Introduction to vegan” session teaching when and how to use multivariate methods including constrained ordination as well as between-group tests |
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| Vegan cheat sheet A Bui – an introductory workshop to useful functions in vegan |
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